The first set of results (September 2008) measuring the performance improvement gained by the switch to java.nio for FLV indexing were not particularly scientific.  Each data point was from a different file, of dramatically different sizes, with dramatically different key-frame spacing.  The improvements are visible, but fuzzy. 

From the ever powerful yet flawed Wikipedia, there is a concept to help bring these metrics into focus:

Cēterīs paribus is a Latin phrase, literally translated as "with other things the same." It is commonly rendered in English as "all other things being equal." A prediction, or a statement about causal or logical connections between two states of affairs, is qualified by ceteris paribus in order to acknowledge, and to rule out, the possibility of other factors which could override the relationship between the antecedent and the consequent.

A ceteris paribus assumption is often fundamental to the predictive purpose of scientific inquiry. In order to formulate scientific laws, it is usually necessary to rule out factors which interfere with examining a specific causal relationship. Experimentally, the ceteris paribus assumption is realized when a scientist controls for all of the independent variables other than the one under study, so that the effect of a single independent variable on the dependent variable can be isolated. By holding all the other relevant factors constant, a scientist is able to focus on the unique effects of a given factor in a complex causal situation.

Blah, blah, blah.  OK, back to gathering more data with this in mind.

With a single set of 8 files from production webcasts, more results were captured in two series.  The second series was measured immediately after the first series on physically separate copies of the files.  Measurements were taken one fine evening last November on the production server described in the first post--activity was not too busy at the time, maybe 10% of capacity.

(Drum roll please...) The results:

File Size (KB)	Speed (KBps)
	v2.2 (java.io)	v2.2 (java.io)	v2.4 (java.nio)	v2.4 (java.nio)
61,793	67,965	72,647	200,239	202,806
70,079	31,418	30,798	73,225	91,648
82,645	30,529	31,286	84,291	91,887
82,951	53,388	50,290	144,458	154,158
88,086	29,106	29,134	71,360	69,012
101,500	28,491	28,935	75,644	80,758
122,606	30,839	31,954	84,035	92,383
289,423	42,374	41,479	112,543	112,773

Interpretations:

1. Much more consistent, although in hindsight I should have encoded a video from a single source to various different qualities.  This would have made the number of index points consistent across each file.
2. On average, java.nio performed 273% faster than java.io.
3. The mean performance increase was 277%
4. The minimum was 241%
5. The maximum improvement was 288%